热科院-杨耀东导师介绍

更新于 2021-10-31 导师主页
杨耀东 研究员 硕士生导师
热科院
农艺与种业
热带油料作物逆境生理研究,作物基因组与遗传
yyang@catas.cn

德国海德堡大学植物分子与细胞生物学专业博士,中国热带农业科学院椰子研究所研究员,在美国Donald Danforth Plant Science Center和Delaware Biotechnology Institute从事研究工作多年,现任海南省热带油料作物生物学重点实验室常务副主任等职。主要从事油棕、椰子等热带油料作物重要农艺性状的解析、分子标记的开发、作物指纹图谱的构建和分子辅助育种技术等研究工作。近年主持国家基金面上项目、省国际合作专项、人社部高层次留学回国工作资助项目等各类科研项目18项,发表了有影响的SCI论文41篇,其中第一作者或通讯作者20篇,SCI总影响因子147.61(文章被引用2150篇次),其他论文35篇,授权中国发明专利2项(第一完成人), 外国专利1项(第二完成人),软件著作权2项, 获海南省科技进步三等奖(第二完成人)一项。是国家重点研发专项计划评审专家,FAO热带作物培训专家库入库专家和亚太地区椰子产业发展高级专家咨询组成员和国际椰子基因组专题行动组的负责人。2014年获第五届中国侨界贡献奖(创新人才奖)。


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科研项目

1. 国家基金面上项目(32071805)-椰子R2R3-MYBs转录因子在外果皮颜色形成中的作用及调控机理研究(2021-2024)58万

2. 海南省创新研究团队项目(320CXTD444)-基于多组学的椰子低温胁迫应答与适应的分子机理研究(2021-2023)30万

3. 国家基金面上项目(31870670)-转录因子EgWRI1s在油棕脂肪酸组分差异形成中的调控机理研究(2019-2022)60万

4. 海南省重大科技计划课题-热带作物品质形成与遗传改良(2022-2024)125万

5. 中国热带农业科学院创新团队(NO.17CXTD-28)-椰子重要性状的解析及功能基因的挖掘与应用-(1630152017019,2017-2021))50万

6. 中国-斯里兰卡椰子研究联合实验室(2018-2020)90万

7. 科技部亚非国家杰出青年科学家来华工作项目-孟加拉国-19-005(2019-2020)15万

8. 科技部亚非国家杰出青年科学家来华工作项目-孟加拉国-19-007 (2020-2021) 15万


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研究成果

一、主要代表论文

1. Yang Yaodong, Saand Mumtaz Ali, Liyun Huang,Walid Badawy Abdelaa,Jun Zhang,Yi Wu,Jing Li, Muzafar Hussain Sirohi and Fuyou Wang (2021) Applications of Multi-Omics Technologies for Crop Improvement (2021) Frontiers in Plant Science, DOI:10.3389/fpls.2021.563953

2. Yaodong Yang, Liyun Huang, Chunyan Xu, Lan Qi, Zhangyan Wu, Jia Li, Haixin Chen, Yi Wu, Tao Fu, Hui Zhu, Mumtaz Ali Saand, Jing Li, Liyun Liu, Haikou Fan, Huanqi Zhou, Weiquan Qin (2021) Chromosome-scale genome assembly of areca palm (Areca catechu) Molecular Ecology Resources, 16 June 2021 https://doi.org/10.1111/1755-0998.13446

3. Yaodong Yang, Stéphanie Bocs, Haikuo Fan, Alix Armero, Luc Baudoui, Pengwei Xu, Junyang Xu, Dominique This, Chantal Hamelin, Amjad Iqbal, Rashad Qadri, Lixia Zhou, Jing Li, Yi Wu, Zilong Ma, Auguste Emmanuel Issali, Ronan Rivallan, Na Liu, Wei Xia, Ming Peng 7 & Yong Xiao (2021)Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance Communications Biology 4: 105 (2021). https://doi.org/10.1038/s42003-020-01593-x

4. Jia Li,Xiaocheng Jia,Liyun Liu,Xianmei Cao,Yifan Xiong,Yaodong Yang,Huanqi Zhou,Ming Yi,Meng Li (2020)Comparative biochemical and transcriptome analysis provides insights into the regulatory mechanism of striped leaf albinism in arecanut (Areca catechu L.). Industrial Crops and Products Volume 154, 15 October 2020, 112734

5. Amjad Iqbal, Yaodong Yang, Yi Wu, Jing Li, Muhammad Hamayun, Anwar Hussain, and Farooq Shah (2020) An easy and robust method for the isolation of high quality RNA from coconut tissues. Electronic Journal of Biotechnology,Volume 48, November 2020, Pages 78-85

6. Yaodong Yang*, Mumtaz Ali Saand, Walid Badawy Abdelaal,Jun Zhang, Yi Wu, Jing Li, Haikuo Fan, Fuyou Wang. (2020)iTRAQ-based comparative proteomic analysis of two coconut varieties reveals aromatic coconut cold-sensitive in response to low temperature. Journal of Proteomics DOI 10.1016/j.jprot.2020.103766

7. Numrah Nisar, Faiza Mustafa, Arifa Tahir, Rashad Qadri, Yaodong Yang, Muhammad Imran Khan and Fuyou Wang (2020) Proximate composition, functional properties and quantitative analysis of benzoyl peroxide and benzoic acid in wheat flour samples: effect on wheat flour quality. (2020) PeerJ 8:e8788 DOI 10.7717/peerj.8788

8. Jing Li, Yaodong Yang*, Amjad Iqbal, Rashad Qadri, Peng Shi, Yong Wang, Yi Wu, Haikuo Fan, Guojiang Wu (2019) Correlation Analysis of Cold-Related Gene Expression with Physiological and Biochemical Indicators under Cold Stress in Oil Palm. PLoS One 14 (11):e0225768 (2019) doi.org/10.1371/journal.pone.0225768

9. Jing Li, Yin Min Htwe, Yong Wang*, Yaodong Yang, Yi Wu, Dongxia Li, Abdul Kareemd and Rencai Wang* Analysis of Sugars and Fatty Acids during Haustorium Development and Seedling Growth of Coconut. Agronomy Journal 111:1–9 (2019) doi:10.2134/agronj2019.02.0137

10. Yi Wu#, Yaodong Yang#*, Rashad Qadri, Amjad Iqbal, Jing Li, Haikuo Fan, Yaoting Wu* (2018)Development of SSR Markers for Coconut (Cocos nucifera L.) by Selectively Amplified Microsatellite (SAM) and Its Applications. Tropical plant biology,DOI: 10.1007/s12042-018-9215-1 (2018, *通讯作者) (IF=1.686)

11. Amjad Iqbal*, Yaodong Yang*, Rashad Qadri, Yi Wu, Jing Li, Farooq Shah, Muhammad Hamayun and Anwar Hussain (2018) QRREM method for the isolation of high quality RNA from the complex matrices of coconut. Bioscience Reports (2018, *通讯作者) (IF=2.899) https://doi.org/10.1042/BSR20181163

12. Yang Y., Iqbal A., Qadri R. (2018) Breeding of Coconut (Cocos Nucifera L.): The Tree of Life. In: Al-Khayri J., Jain S., Johnson D. (eds) Advances in Plant Breeding Strategies: Fruits. Springer, Cham (*通讯作者) https://doi.org/10.1007/978-3-319-91944-7_17

13. Numrah Nisar, Kausar J. Cheema, Glen Powell, Mark Bennett, Safee Ullah Chaudhary, Rashad Qadri, Yaodong Yang, Muhammad Azam, John T. Rossiter (2018)Reduced metabolites of nitroaromatics are distributed in the environment via the food chain. Journal of Hazardous Materials 355(5):170-179,DOI: 10.1016/j.jhazmat.2018.05.028

14. Yong Xiao; Pengwei Xu; Haikuo Fan; Luc Baudouin; Wei Xia; Stéphanie Bocs; Junyang Xu; Qiong Li; Anping Guo; Lixia Zhou; Jing Li; Yi Wu; Zilong Ma; Alix Armero; Auguste Emmanuel Issali; Na Liu; Ming Peng; Yaodong Yang* (2017) The genome draft of coconut (Cocos nucifera). GigaScience 6(11):1-11 (*通讯作者) (IF=7.267)

15. Numrah Nisar, Amber Aleem, Faiza Saleem, Fakhra Aslam, Ammara Shahid, Hina Chaudhry, Kausar Malik, Abdulhadi Albaser, Amjad Iqbal, Rashad Qadri, Yaodong Yang* (2017) Reduction of reactive red 241 by oxygen insensitive azoreductase purified from a novel strain Staphylococcus KU898286. PLoS ONE 12(5): e0175551. https://doi.org/10.1371/journal. pone.0175551,(*通讯作者)

16.Yiyun Lin, Yong Wang, Amjad Iqbal, Peng Shi, Jing Li, Yaodong Yang, Xintao Lei (2017) Optimization of culture medium and temperature for the in vitro germination of oil palm pollen. Scientia Horticulturae 220 (2017) 134–138

17. L.X. Zhou*, Y. Xiao, W. Xia and Y.D. Yang (2015) Analysis of genetic diversity and population structure of oil palm (Elaeis guineensis) from China and Malaysia based on species-specific simple sequence repeat (SSR) markers. Genetics and Molecular Research 14 (4): 16247-16254 (2015)

18. Xiao, Yong(#)(*) ,Zhou, Lixia(#) ,Xia, Wei,Mason, Annaliese S.,Yang, Yaodong,Ma, Zilong,Peng, Ming,Exploiting transcriptome data for the development and characterization of gene-based SSR markersrelated to cold tolerance in oil palm (Elaeis guineensis),BMC Plant Biology,2014,14(1):384.

19. Wei Xia, Yong Xiao, Zheng Liu, Yi Luo, AnnalieseS. Mason, Haikuo Fan, Yaodong Yang, Songlin Zhao, Ming Peng (2014) Development of gene-based simple sequence repeat markers for association analysis in Cocos nucifera. Molecular Breeding 01/2014; DOI:10.1007/s11032-014-0055-x

20. Wei Xia, Zheng Liu, Yaodong Yang*, Yong Xiao, Annaliese S. Mason, Songlin Zhao, Zilong Ma. (2014) Selection of reference genes for quantitative real-time PCR in Cocos nucifera during abiotic stress. Botany 2014, 92(3): 179-186, 10.1139/cjb-2013-0212 (*通讯作者)

21. Wei Xia*, Annaliese S Mason, Yong Xiao, Zheng Liu, Yaodong Yang, Xintao Lei, Xiaoming Wu, Zilong Ma, Ming Peng (2014) Analysis of multiple transcriptomes of the African oil palm (Elaeis guineensis) to identify reference genes for RT-qPCR. Journal of Biotechnology 05/2014 22. Lei, Xintao; Xiao, Yong; Xia, Wei; Mason, Annaliese; Yang, Yaodong; Ma, Zilong; Peng, Ming. RNA-Seq analysis of oil palm under cold stress reveals a different CBF-mediated gene expression pattern in Elaeis guineensis compared to other species (PLoS ONE 12/2014; 9(12):e114482.)

23. Haikuo Fan, Yong Xiao, Yaodong Yang*, Wei Xia, Annaliese S. Mason, Zhihui Xia, Fei Qiao, Songlin Zhao, Haoru Tang. (2013) RNA-Seq analysis of Cocos nucifera: transcriptome sequencing and de novo assembly for subsequent functional genomics approaches. PLoS ONE 8(3): e59997. doi:10.1371/journal.pone.0059997, (*通讯作者).

24. Yong Xiao, Yi Luo, Yaodong Yang*, Haikuo Fan, Songlin Zhao, Ross Sager and  Fei Qiao. (2013)Development of microsatellite markers in Cocos nucifera and their application in evaluating the level of genetic diversity of Cocos nucifera. Plant Omics 6(3):193 -200 (*通讯作者)

25. Xiao Yong, Wei Xia, Yaodong Yang*, Annaliese S. Mason, Xintao Lei, Zilong Ma (2013) Characterization and evolution of conserved miRNA through duplication events in date palm (Phoenix dactylifera)  PloS ONE 8(8): e71435. doi:10.1371/journal.pone.0071435 ( *通讯作者)

26. Yaodong Yang, Ulrich Z. Hammes, Christopher G. Taylor, Daniel P. Schachtman,   and Erik Nielsen (2006) High-Affinity Auxin Transport by the AUX1 Influx Carrier Protein.  Current Biology 16: 1160-1160 (SCI影响因子 2006=10.988),

27. Yaodong Yang, Rabab el Amawi, Julia Bubeck, Rainer Pepperkok, Christophe Ritzenthaler, and David G. Robinson (2005) Dynamics of COPII vesicles and the Golgi apparatus in cultured Nicotiana tabacum BY-2 cells provides evidence for transient association of Golgi stacks with endoplasmic reticulum exit sites.. Plant Cell 17(5): 1513–1531 (SCI影响因子2005=11.088)

28. Swarup, K*., Swarup, R*., Benkova, E*., Casimiro, I*., Péret. B*., Yang, Y., Carrier, D., Nielson, E., De Smet, I., Vaneste, S., Parry, G., James, N., Calvo, V., Ljung, K., Kramer, E.M., Graham, N., Marillonnet, S., Patel, K., Jones, J.D.G., Taylor, C.G., Schachtman, D.P., May, S.T., Sandberg, G., Friml, J., Kerr, I., Beeckman, T., Laplaze, L. and Bennett, M.J. (2008) The auxin influx carrier LAX3 promotes lateral root emergence. Nature Cell Biology 10:946-954. (SCI影响因子2007=17.776)被引用次数396 (来源Google Scholar) (*共同第一作者)

29. Gili Ben-Nissan*, Weier Cui*, Dong-Jin Kim*, Yaodong Yang*, Byung-Chun Yoo, Jung-Youn Lee (2008). Arabidopsis Casein Kinase 1-Like 6 (CKL6) Contains Microtubule-Binding Domain and Affects Organization of Cortical Microtubules Plant Physiol. 148:1897-1907(SCI影响因子2007=6.367)被引用次数43 (来源Google Scholar)*共同第一作者

30. Inmaculada Contreras*, Yaodong Yang*, David G. Robinson, and Fernando Aniento (2004) Sorting Signals in the Cytosolic Tail of Plant p24 Proteins Involved in the Interaction with the COPII Coat. Plant Cell Physiol. 45: 1779-1786 (SCI影响因子2004=3.25) (*共同第一作者)

31. Gili Ben-Nissan, Yaodong Yang, Jung-Youn Lee. (2010) Partitioning of Casein Kinase 1-like 6 to Late Endosome-like Vesicles Protoplasma. 2010 Apr; 240(1-4):45-56.

32. Benjamin Péret, Kamal Swarup, Alison Ferguson, Malvika Seth, Yaodong Yang,  Stijn Dhondtc,  Nicholas James, Ilda Casimiro, Paula Perry,  Adnan Syed, Haibing Yang, Jesica Reemmer, Edward Venison,  Caroline Howells,  Miguel A. Perez-Amador,Jeonga Yun, Jose Alonso, Gerrit T.S. Beemster,  Laurent Laplaze,  Angus Murphy, Malcolm J. Bennett,Erik Nielsen and Ranjan Swarup. (2012)AUX/LAX Genes Encode a Family of Auxin Influx Transporters That Perform Distinct Functions during Arabidopsis Development. Plant Cell  (影响因子2011=8.958) Jul;24(7):2874-85.

二、其他科技成果

1. 授权专利;

一种用于香水椰子种苗纯度的鉴定的特异SSR引物及鉴定方法(CN201410657128.5)

杨耀东;吴翼;沈雁;肖勇;夏薇;李静;周丽霞。专利申请日:2014年11月18日,授权公告日:2017年04月19日 证书号第2460669号

一种油棕叶片总蛋白质的专用提取液及提取方法(CN201410657130.2)

杨耀东;吴翼;肖勇;李静;周丽霞;夏薇;沈雁。专利申请日:2014年11月18日,授权公告日:2018年06月19日 证书号第2965972号

An easy method for gDNA isolation from palm leave. SI, No:143018 Amjad Iqbal, Yaodong Yang, Rashad Qadri, Farooq Shah, Muhammad Hamayun and Anwar Hussain, (第二完成人)

2. 软件著作权:

椰子指纹图谱数据库系统  2019SR0887605           软著登字第4308362号

海南椰子品种资源数据库系统 2019SR0887669    软著登字第4308426号

3. 科技奖:

海南省科技进步奖(三等奖)油棕高产、抗寒的生物学基础研究

曹红星、杨耀东、肖勇、雷新涛、王永、周丽霞

4.  2014年中国侨界贡献奖(创新人才奖)

5. 主编《椰子分子标记和DNA指纹图谱及应用》


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学校介绍

中国农业科学院研究生院成立于1979年,1981年经国务院批准开始实施硕士、博士学历学位教育,是我国国家级科研机构举办研究生教育的先行院所之一。作为支撑我院研究生教育的中国农业科学院成立于1957年,是农业农村部直属的综合性国家农业科研机构,是全国综合性农业科学研究的最高学术机构,是农业及农业科学技术战略咨询机构,是三农领域国家战略科技力量,担负着全国农业重大基础与应用基础研究、应用研究和高新技术技术研究的任务,致力于解决我国农业及农村经济发展中公益性、基础性、全局性、战略性、前瞻性的重大科学与技术问题。在推动农业科技创新、服务经济社会发展、培养高层次人才、促进国际交流与合作等方面发挥着重要作用。“十三五”期间,共获得国家科学技术奖36项,占全国农业领域获奖总数的26%。其中科技进步一等奖1项,自然科学二等奖2项,技术发明二等奖6项,科技进步二等奖27项;获得省部级奖励229项;发表论文近30000篇,其中SCI论文近15000篇、《NATURE》《SCIENCE》《CELL》等国际顶级学术期刊论文29篇;出版专著近1500部,通过国审品种等近1200个,获得植物新品种权397项,新兽药证书55个等。科研成果与科研实力处于行业领先地位。

中国农科院研究生教育依托中国农业科学院的国家级科研平台基地、先进科研设施设备、重大科研攻关项目、稳定的科研经费保障、前沿交叉学科集群、一流的导师队伍、广泛的国际合作机制、丰富的图书文献等各种重要资源,形成了38个研究所共同参与、“院所结合、两段式培养”这一特色鲜明的科研机构举办研究生教育的创新模式,将中国农业科学院的科研资源优势转化为学科建设、人才培养、特色办学优势,为研究生完成课程教学、开展学术研究、参与课题实践、培养创新能力提供了农业科研国家队特有的广阔舞台。

中国农业科学院深圳农业基因组研究所(以下简称“基因组所”),创建于2014年,是农业农村部,中国农科院和深圳市在科技体制改革的背景下,整合农业基因组学研究力量在深圳成立的新型研究所。

  成立以来,基因组所深入贯彻落实习近平总书记“四个面向、两个一流”指示精神,开展科研自主权改革试点工作,被列为中国农科院现代院所改革的“试验田”,建设了由中国农科院与深圳市主管领导任共同理事长的理事会;组建了近800人的研究队伍;形成了以组学技术为核心、辐射农业、食品和生态方向的学科体系,获批“岭南现代农业科学与技术广东省实验室深圳分中心”“农业农村部农业基因数据分析重点实验室”等创新载体;在包括 Science、Nature、Cell 等顶级期刊在内的杂志上发表SCI论文400多篇,以基因组设计育种育成国审、省审新品种30余个,农业基因组学等研究领域占据世界前沿。 2019年、2020年连续两年自然指数排名全国农业类科研院所第一名,多项成果入选“‘十三五’农业科技十大标志性成果”“中国生命科学十大进展”“中国农业科学十大进展”。先后获得“何梁何利基金”奖、“周光召基础科学奖”“深圳经济特区建立40周年创新创业和先进模范人物”“深圳市市长奖”等奖励。基因组所联合深圳市相关部门提出了“深圳国际食品谷”,规划已得到市政府印发,将构建农业食品产学研协作生态,做出科技推动农业食品产业转型升级的先行示范。

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按照国家相关规定,我院全日制与非全日制硕士研究生学费标准均为:10000元/人/年。凡我院各研究所录取的推免生均免收第一年学费,优秀推免生免收基本学制内全部学费。

  我院全日制非定向硕士研究生奖助学金体系由奖学金和助学金两部分组成。奖学金包括国家奖学金、学业奖学金(100%覆盖)、研究生院单项奖学金和企业奖学金。助学金包括国家助学金、研究生院助学金、导师助研津贴、“三助”津贴和特困生补助,具体奖助学金政策可登陆中国农业科学院研究生院网站查询。

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