主持国家重点研发计划“蓝色粮仓科技创新”重点专项项目、国家自然科学基金、国家863计划课题、国家科技支撑计划课题、国家藻类产业技术体系岗位专家、万人计划领军人才专项、农业科研杰出人才、农业农村部财政专项、山东省泰山学者特聘专家、“鳌山人才”优秀青年学者专项、山东省杰出青年科学基金和青岛市创业创新领军人才计划等项目（课题）30余项，项目经费累计6000多万元，留所经费累计3400多万元。

1. 国家重点研发计划“蓝色粮仓科技创新”重点专项，典型养殖系统对自然水域生态系统的影响机理（2018YFD0900700），2018-2022，3708万元，主持

2. 国家万人计划-科技创新领军人才，海洋生物与资源学，2018-2020，80万元，主持

3. 国家藻类产业技术体系，“浅海筏式养殖”岗位（CARS-50），2017-2020，350万元，主持

4. 山东省重大科技创新工程，贝藻良种扩繁工艺体系及生态健康养殖模式的建立与应用（2019JZZY020706），2019-2021，350万元，主持

5. 泰山学者（特聘专家），海洋生物与资源学，2018-2022，200万元，主持

(1)Yitao Wang, Xiao Fan, Guang Gao, John Beardall,Kazuo Inaba, Jason M. Hall-Spencer, Dong Xu, Xiaowen Zhang, Wentao Han, AndrewMcMinn and Naihao Ye*. Decreased motility of flagellated microalgae long-termacclimated to CO2-induced acidified waters. Nature Climate Change,2020, 10:561–567.

(2)Xiao Fan1, Huan Qiu1, WentaoHan, Yitao Wang, Dong Xu, Xiaowen Zhang, Debashish Bhattacharya*, Naihao Ye*.Phytoplankton pangenome reveals extensive prokaryotic horizontal gene transferof diverse functions. Science Advances, 2020, 6(18):eaba0111.

(3)Zhang Xiansheng1, Xu Dong1,Huang Shujie, Wang Shaohua, Han Wentao, Liang Chengwei, Zhang Yan, Fan Xiao,Zhang Xiaowen, Wang Yitao, Wang Wei, Egan Suhelen, Saha Mahasweta, Li Fang*, YeNaihao*. The effect of elevated pCO2 on cadmium resistance of aglobally important diatom. Journal of Hazardous Materials, 2020, 396:122749.

(4)Dong Xu, Charlotte-Elisa Schaum, Bin Li, YananChen, Shanying Tong, Fei-Xue Fu, David A. Hutchins, Xiaowen Zhang, Xiao Fan,Wentao Han, Yitao Wang, Naihao Ye*. Acclimation and adaptation to elevated pCO2increase arsenic resilience in marine diatoms. ISME JOURNAL, 2021,15:1599–1613.

(5)Xiao Fan, Wentao Han, Linhong Teng, Peng Jiang,Xiaowen Zhang, Dong Xu, Chang Li, Matteo Pellegrini, Chunhui Wu, Yitao Wang,Michelle Joyce Slade Kaczurowski, Xin Lin, Leila Tirichine, Thomas Mock*,Naihao Ye*. Single-base methylome profiling of the giant kelp Saccharinajaponica reveals significant differences in DNA methylation to microalgae andplants. New Phytologist, 2020, 225(1): 234-249.

(6)Dong Xu, Georgina Brennan, Le Xu, Xiaowen Zhang,Fan Xiao, Wentao Han, Thomas Mock, Andrew McMinn, David A. Hutchins, NaihaoYe*.Ocean acidification increases iodine accumulation in kelp‐based coastalfood webs. Global Change Biology, 2019, 25(2):629-639.

(7)Dong Xu, C.-Elisa Schaum, Fan Lin, Ke Sun, James R.Munroe, Xiaowen Zhang, Xiao Fan, Linhong Teng, Yitao Wang, Zhimeng Zhuang,Naihao Ye*. Acclimation of bloom‐forming and perennial seaweeds to elevated pCO2conserved across levels of environmental complexity. Global Change Biology,2017, 23(11):4828-4839.

(8)Long Zhao1, Feng Gao1, Shan Gao1,Yujun Liang1, Hongan Long1, Zhiyi Lv1, Ying Su1,Naihao Ye1, Liusuo Zhang1, Chengtian Zhao1,Xiaoyu Wang, Weibo Song*, Shicui Zhang*, Bo Dong*. Biodiversity-baseddevelopment and evolution: the emerging research systems in model and non-modelorganisms. Science China Life Sciences, 2021. DOI: 10.1007/s11427-020-1915-y

(9)Naihao Ye*, Xiaowen Zhang, Miao Miao, Xiao Fan, Yi Zheng, Dong Xu, Jinfeng Wang, Dongsheng Wang, Yuan Gao, Yitao Wang, Wenyu Shi, Peifeng Ji, Demao Li, Zheng Guan, Changwei Shao, Zhimeng Zhuang, Zhengquan Gao, Ji Qi*, Fangqing Zhao*(2015). Saccharina genome provides novel insight into kelp biology. Nature communications, 2015, 6: 6986.

(10)Yongyu Zhang, Peimin He,Hongmei Li, Gang Li, Jihua Liu, Fanglue Jiao, Jianheng Zhang, Yuanzi Huo,Xiaoyong Shi, Rongguo Su, Naihao Ye, Dongyan Liu, Rencheng Yu, Zongling Wang,Mingjiang Zhou, Nianzhi Jiao*. Ulva prolifera green tide outbreaks andtheir environmental impact in the Yellow Sea, China. National Science Review, 2019,6(4): 825–838.