研究论文

[1] Yubo Zhang, Chee Hong Wong, Ramon Birnbaum, Guoliang Li, Rebecca Favaro, Chew Yee Nyan, Eunice Tai, Joanne Lim Hui Ping, Huay Mei Poh, Fabianus Hendriyan Mulawadi, Silvia Nicolis, Nadav Ahituv, Yijun Ruan and Chia-Lin Wei. Dynamic chromatin connectivity maps reveal lineage specific regulation. Nature. 2013, 504, 306-310.

[2] Siyuan Kong, Qing Li, Gaolin Zhang, Qiujia Li, Qitong Huang, Lei Huang, Hui Zhang, Yinghua Huang, Yanling Peng, Baoming Qin, Yubo Zhang, Exonuclease combinations reduce noises in 3D genomics technologies. Nucleic Acids Research, 2020.gkaa106, https://doi.org/10.1093/nar/gkaa106

[3]黄其通，李清，张玉波. 染色质构象与基因功能. 遗传. 2020, 42 (1): 1-17.   DOI: 10.16288/j.yczz.19-257

[4]Kong, S. & Zhang, Y. Deciphering Hi-C: from 3D genome to function. Cell Biol Toxicol. 2019 Feb;35(1):15-32.  (通讯作者)

[5]Peng YL, Zhang YB. Enhancer and super-enhancer: Positive regulators in gene transcription. Animal Model Exp Med. 2018; 1:169-179. (通讯作者)

[6]张玉波. 三维基因组学与精准生物学[J]. 中国生物化学与分子生物学报, 2018, 34(4): 351-363. (通讯作者)

[7]Kamada R, Yang W, Zhang Y, Patel MC, Yang Y, Ouda R, Dey A, Wakabayashi Y, Sakaguchi K, Fujita T, Tamura T, Zhu J, Ozato K., Interferon stimulation creates chromatin marks and establishes transcriptional memory. Proc Natl Acad Sci., 2018, 115(39):E9162-E9171 doi: 10.1073/pnas.1720930115. (共同一作)

[8]Xiusheng Zhu, Lei Huang, Qing Li, Yubo Zhang. Start from Scratch: Precisely Identify Massive Active Enhancers by Sequencing. bioRxiv 604686; doi: https://doi.org/10.1101/604686. (通讯作者)

[9]Lei Huang, Qing Li, Qitong Huang, Siyuan Kong, Xiusheng Zhu, Yanling Peng, Yubo Zhang. Enhancer-promoter association determines Sox2 transcription regulation in mouse pluripotent cells. bioRxiv 590745; doi: https://doi.org/10.1101/590745. (通讯作者)

[10] Lusy Handoko, Han Xu, Guoliang Li, Chew Yee Ngan, Elaine Chew, Marie Schnapp, Charlie Wah Heng Lee, Chaopeng Ye, Joanne Lim Hui Ping, Fabianus Mulawadi, Eleanor Wong, Jianpeng Sheng, Yubo Zhang, Thompson Poh, Chee Seng Chan, Galih Kunarso, Atif Shahab, Guillaume Bourque, Valere Cacheux-Rataboul, Wing-Kin Sung, Yijun Ruan & Chia-Lin Wei. CTCF-mediated functional chromatin interactome in pluripotent cells. Nature Genetics. 2011, 43, 630-638.

[11]McReynolds LJ, Yang Y, Yuen Wong H, Tang J, Zhang Y, Mulé MP, Daub J, Palmer C, Foruraghi L, Liu Q, Zhu J, Wang W, West RR, Yohe ME, Hsu AP, Hickstein DD, Townsley DM, Holland SM, Calvo KR, Hourigan CS. MDS-associated mutations in germline GATA2 mutated patients with hematologic manifestations. Leuk Res. 2019 Jan;76:70-75.

[12]McReynolds LJ, Zhang Y, Yang Y, Tang J, Mulé M, Hsu AP, Townsley DM, West RR, Zhu J, Hickstein DD, Holland SM, Calvo KR, Hourigan CS. Rapid progression to AML in a patient with germline GATA2 mutation and acquired NARS Q61K. Leukemia Research Reports. Leuk Res Rep. 2019 Jun 10; 12:100176. doi: 10.1016/j.lrr.2019.100176. eCollection 2019.

[13]Kong S, Ruan J, Zhang K, Hu B, Cheng Y, Zhang Y, Yang S, Li K. Kill two birds with one stone: making multi-transgenic pre-diabetes mouse models through insulin resistance and pancreatic apoptosis pathogenesis. Peer J. 2018 Apr 17;6:e4542. doi: 10.7717/peerj.4542.

[14]Ting Ni, Wenjing Yang, Miao Han, Yubo Zhang, Ting Shen1, Hongbo Nie, Zhihui Zhou, Yalei Dai, Yanqin Yang, Poching Liu, Kairong Cui, Zhouhao Zeng, Yi Tian, Bin Zhou, Gang Wei, Keji Zhao, Weiqun Peng, Jun Zhu. Global intron retention mediated gene regulation during CD4+ T cell activation. Nucleic Acids Research. 2016, 19;44(14):6817-29.

[15]Kong S, Li L, Zhu W, Xin L, Ruan J, Zhang Y, Yang S, Li K. Genetic characteristics of polycistronic system‑mediated randomly‑inserted multi‑transgenes in miniature pigs and mice. Mol Med Rep. 2018, 17(1):37-50.

[16]Tang Z, Wu Y, Yang Y, Yang YT, Wang Z, Yuan J, Yang Y, Hua C, Fan X, Niu G, Zhang Y, Lu ZJ, Li K. Comprehensive analysis of long non-coding RNAs highlights their spatio-temporal expression patterns and evolutional conservation in Sus scrofa. Sci Rep. 2017, 7:43166

[17] Sakurai T, Sakurai A, Chen Y, Vaisman BL, Amar MJ, Pryor M, Thacker SG, Zhang X, Wang X, Zhang Y, Zhu J, Yang ZH, Freeman LA, Remaley AT. Dietary α-cyclodextrin reduces atherosclerosis and modifies gut flora in apolipoprotein E-deficient mice. Mol Nutr Food Res. 2017, doi: 10.1002/mnfr.201600804.

发明专利

· 张玉波，李东卫，黄其通，黄雷，李清；一种基于超顺磁性纳米颗粒的DNA提取吸附液试剂盒以及DNA提取方法，2020，申请号为：202010046781.3

· 张玉波，李秋佳；一种高通量测序调取未知RNA全长序列的方法，2020，申请号为：202010398919.6

· 张玉波，朱秀生，黄雷，李清；一种活性增强子筛选载体及其构建方法，2019，专利申请号为：201910529227.8

· 张玉波，朱秀生，黄雷，李清；一种基于随机序列利用载体筛选活性增强子的方法，2019，专利申请号为：20190529253.0

· 张玉波，付亚娟，徐波，王帅；一种精准获得全基因组范围内结构变异的方法，2018，专利申请号为：201811546406.4

· 张玉波，孔思远，张高林，范磊，黄其通，李清，黄雷，彭艳玲；一种消除三维基因组学技术噪音的方法及应用[P]. 2018，广东：申请号CN201810589919.7

· 张玉波；孔思远，张高林，黄其通，范磊，李清，黄雷，彭艳玲；利用外切酶组合消除三维基因组学技术噪音的方法及应用[P]. 2018，广东：申请号CN201810589904.0

· 张玉波，孔思远，黄其通，李琳，黄雷，白立景，彭艳玲；一种基于少量细胞全基因组染色质高分辨率构象技术eHi-C 2.0，2017，专利申请号为：201710773996.3

· 张玉波，孔思远，黄其通，黄雷，王秋雁，白立景，张高林，钟学优；一种高效的全基因组染色质构象技术eHi-C，2016，授权公告号为：CN106566828B